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Segmentation algorithm of ischemic stroke lesion based on 3D deep residual network and cascade U-Net
WANG Ping, GAO Chen, ZHU Li, ZHAO Jun, ZHANG Jing, KONG Weiming
Journal of Computer Applications
2019, 39 (11):
3274-3279.
DOI: 10.11772/j.issn.1001-9081.2019040717
Artificial identification of ischemic stroke lesion is time-consuming, laborious and easy be added subjective differences. To solve this problem, an automatic segmentation algorithm based on 3D deep residual network and cascade U-Net was proposed. Firstly, in order to efficiently utilize 3D contextual information of the image and the solve class imbalance issue, the patches were extracted from the stroke Magnetic Resonance Image (MRI) and put into network. Then, a segmentation model based on 3D deep residual network and cascade U-Net was used to extract features of the image patches, and the coarse segmentation result was obtained. Finally, the fine segmentation process was used to optimize the coarse segmentation result. The experiment results show that, on the dataset of Ischemic Stroke LEsion Segmentation (ISLES), for the proposed algorithm, the Dice similarity coefficient reached 0.81, the recall reached 0.81 and the precision reached 0.81, the distance coefficient Average Symmetric Surface Distance (ASSD) reached 1.32 and Hausdorff Distance (HD) reached 22.67. Compared with 3D U-Net algorithm, level set algorithm, Fuzzy C-Means (FCM) algorithm and Convolutional Neural Network (CNN) algorithm, the proposed algorithm has better segmentation performance.
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